Comparing Data-Mining Algorithms Developed for Longitudinal Observational Databases

8 Pages Posted: 28 Aug 2016

See all articles by Jenna Reps

Jenna Reps

University of Nottingham - School of Computer Science

Jonathan Garibaldi

University of Nottingham - School of Computer Science

Uwe Aickelin

University of Melbourne - School of Computing and Information Systems

Daniele Soria

University of Nottingham - School of Computer Science

Jack Gibson

University of Nottingham - Division of Epidemiology and Public Health

Richard Hubbard

University of Nottingham - School of Medicine

Date Written: January 1, 2012

Abstract

Longitudinal observational databases have become a recent interest in the post marketing drug surveillance community due to their ability of presenting a new perspective for detecting negative side effects. Algorithms mining longitudinal observation databases are not restricted by many of the limitations associated with the more conventional methods that have been developed for spontaneous reporting system databases. In this paper we investigate the robustness of four recently developed algorithms that mine longitudinal observational databases by applying them to The Health Improvement Network (THIN) for six drugs with well document known negative side effects. Our results show that none of the existing algorithms was able to consistently identify known adverse drug reactions above events related to the cause of the drug and no algorithm was superior.

Suggested Citation

Reps, Jenna and Garibaldi, Jonathan and Aickelin, Uwe and Soria, Daniele and Gibson, Jack and Hubbard, Richard, Comparing Data-Mining Algorithms Developed for Longitudinal Observational Databases (January 1, 2012). Available at SSRN: https://ssrn.com/abstract=2828497 or http://dx.doi.org/10.2139/ssrn.2828497

Jenna Reps

University of Nottingham - School of Computer Science ( email )

Jubilee Campus
Wollaton Road
Nottingham, NG8 1BB
United Kingdom

Jonathan Garibaldi

University of Nottingham - School of Computer Science ( email )

Jubilee Campus
Wollaton Road
Nottingham, NG8 1BB
United Kingdom

Uwe Aickelin (Contact Author)

University of Melbourne - School of Computing and Information Systems ( email )

Australia

Daniele Soria

University of Nottingham - School of Computer Science

Jubilee Campus
Wollaton Road
Nottingham, NG8 1BB
United Kingdom

Jack Gibson

University of Nottingham - Division of Epidemiology and Public Health ( email )

University Park
Nottingham, NG8 1BB
United Kingdom

Richard Hubbard

University of Nottingham - School of Medicine ( email )

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