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Mapping Causal Variants with Single Nucleotide Resolution Reveals the Biochemical Drivers of Phenotypic Change

57 Pages Posted: 6 Apr 2018 Publication Status: Published

See all articles by Richard She

Richard She

Stanford University - Department of Chemical and Systems Biology

Daniel F. Jarosz

Stanford University - Department of Chemical and Systems Biology; Stanford University - Department of Developmental Biology

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Abstract

Understanding the sequence determinants that give rise to diversity among individuals and species is the central challenge of genetics. Despite ever-greater numbers of sequenced genomes, most genome-wide association studies cannot distinguish causal variants from linked passenger mutations spanning many genes. We report that this inherent challenge can be overcome in model organisms. By pushing the advantages of inbred crossing to its practical limit in Saccharomyces cerevisiae, we improved the statistical resolution of linkage analysis to single nucleotides. This 'super-resolution' approach allowed us to map 370 causal variants across 26 quantitative traits. Our data systematically unmasked complex genetic architectures, revealing that multiple closely linked driver mutations frequently act on the same quantitative trait. Causal variants comprise an extraordinarily diverse set of biochemical perturbations, providing mechanistic insight into the basis of phenotypic change. Single nucleotide mapping thus complements traditional deletion and overexpression screening paradigms and opens new frontiers in quantitative genetics.

Suggested Citation

She, Richard and Jarosz, Daniel F., Mapping Causal Variants with Single Nucleotide Resolution Reveals the Biochemical Drivers of Phenotypic Change (2018). Available at SSRN: https://ssrn.com/abstract=3155615 or http://dx.doi.org/10.2139/ssrn.3155615
This version of the paper has not been formally peer reviewed.

Richard She

Stanford University - Department of Chemical and Systems Biology

Stanford, CA 94305
United States

Daniel F. Jarosz (Contact Author)

Stanford University - Department of Chemical and Systems Biology ( email )

Stanford, CA 94305
United States

Stanford University - Department of Developmental Biology ( email )

Stanford, CA 94305
United States